IL_5TCU_064

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGC*GACC

Length

7 nucleotides

Bulged bases

5TCU|1|B|A|489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_064 not in the Motif Atlas

Geometric match to IL_3SJ2_001

Geometric discrepancy: 0.2345

The information below is about IL_3SJ2_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

5TCU|1|B|G|35
5TCU|1|B|G|36
5TCU|1|B|C|37
*
5TCU|1|B|G|488
5TCU|1|B|A|489
5TCU|1|B|C|490
5TCU|1|B|C|491

Current chains

Chain B

23S RRNA

Nearby chains

Chain L3

50S ribosomal protein L20

Chain LJ

50S ribosomal protein L4