IL_5TCU_065

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAA*UCUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_065 not in the Motif Atlas

Homologous match to IL_4WF9_003

Geometric discrepancy: 0.2817

The information below is about IL_4WF9_003

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_82096.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

5TCU|1|B|G|42
5TCU|1|B|A|43
5TCU|1|B|A|44
*
5TCU|1|B|U|480
5TCU|1|B|C|481
5TCU|1|B|U|482
5TCU|1|B|C|483

Current chains

Chain B

23S RRNA

Nearby chains

Chain LG

50S ribosomal protein L34