IL_5TCU_071

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AC*GGAU

Length

6 nucleotides

Bulged bases

5TCU|1|B|G|410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_071 not in the Motif Atlas

Geometric match to IL_7RQB_073

Geometric discrepancy: 0.3618

The information below is about IL_7RQB_073

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_88739.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

5TCU|1|B|A|305
5TCU|1|B|C|306
*
5TCU|1|B|G|409
5TCU|1|B|G|410
5TCU|1|B|A|411
5TCU|1|B|U|412

Current chains

Chain B

23S RRNA

Nearby chains