IL_5TCU_074

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCAC*GAGUGAAAUAGAAC

Length

18 nucleotides

Bulged bases

5TCU|1|B|U|549, 5TCU|1|B|A|553

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_074 not in the Motif Atlas

Homologous match to IL_4WF9_015

Geometric discrepancy: 0.135

The information below is about IL_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.1

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

9

Unit IDs

5TCU|1|B|G|527
5TCU|1|B|C|528
5TCU|1|B|A|529
5TCU|1|B|C|530
*
5TCU|1|B|G|541
5TCU|1|B|A|542
5TCU|1|B|G|543
5TCU|1|B|U|544
5TCU|1|B|G|545
5TCU|1|B|A|546
5TCU|1|B|A|547
5TCU|1|B|A|548
5TCU|1|B|U|549
5TCU|1|B|A|550
5TCU|1|B|G|551
5TCU|1|B|A|552
5TCU|1|B|A|553
5TCU|1|B|C|554

Current chains

Chain B

23S RRNA

Nearby chains

Chain L5

50S ribosomal protein L22

Chain L7

50S ribosomal protein L24