IL_5TCU_079

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUGA*UUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_079 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.2719

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5TCU|1|B|U|638
5TCU|1|B|U|639
5TCU|1|B|G|640
5TCU|1|B|A|641
*
5TCU|1|B|U|704
5TCU|1|B|U|705
5TCU|1|B|U|706
5TCU|1|B|G|707

Current chains

Chain B

23S RRNA

Nearby chains

Chain LH

50S ribosomal protein L35

Chain LJ

50S ribosomal protein L4

Chain LO

50S ribosomal protein L15