IL_5TCU_080

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_080 not in the Motif Atlas

Homologous match to IL_4WF9_019

Geometric discrepancy: 0.1906

The information below is about IL_4WF9_019

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5TCU|1|B|U|649
5TCU|1|B|U|650
5TCU|1|B|A|651
5TCU|1|B|A|652
5TCU|1|B|G|653
*
5TCU|1|B|U|663
5TCU|1|B|G|664
5TCU|1|B|G|665
5TCU|1|B|A|666
5TCU|1|B|G|667

Current chains

Chain B

23S RRNA

Nearby chains

Chain LJ

50S ribosomal protein L4

Chain LO

50S ribosomal protein L15