IL_5TCU_093

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

5TCU|1|B|A|955, 5TCU|1|B|A|956

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_093 not in the Motif Atlas

Homologous match to IL_7A0S_029

Geometric discrepancy: 0.2191

The information below is about IL_7A0S_029

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_16301.1

Basepair signature

cWW-cWS-tWH-R-L-R-cWW

Number of instances in this motif group

9

Unit IDs

5TCU|1|B|G|909
5TCU|1|B|C|910
5TCU|1|B|A|911
5TCU|1|B|C|912
5TCU|1|B|U|913
*
5TCU|1|B|A|954
5TCU|1|B|A|955
5TCU|1|B|A|956
5TCU|1|B|C|957

Current chains

Chain B

23S RRNA

Nearby chains

Chain C

5S ribosomal RNA; 5S rRNA

Chain LP

50S ribosomal protein L16