IL_5TCU_101
3D structure
- PDB id
- 5TCU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Methicillin sensitive Staphylococcus aureus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAAAAG*CGAAAAUGUACCGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 5TCU|1|B|A|1171, 5TCU|1|B|U|1174
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5TCU_101 not in the Motif Atlas
- Geometric match to IL_4WF9_040
- Geometric discrepancy: 0.2197
- The information below is about IL_4WF9_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
5TCU|1|B|G|1068
5TCU|1|B|G|1069
5TCU|1|B|A|1070
5TCU|1|B|A|1071
5TCU|1|B|A|1072
5TCU|1|B|A|1073
5TCU|1|B|G|1074
*
5TCU|1|B|C|1168
5TCU|1|B|G|1169
5TCU|1|B|A|1170
5TCU|1|B|A|1171
5TCU|1|B|A|1172
5TCU|1|B|A|1173
5TCU|1|B|U|1174
5TCU|1|B|G|1175
5TCU|1|B|U|1176
5TCU|1|B|A|1177
5TCU|1|B|C|1178
5TCU|1|B|C|1179
5TCU|1|B|G|1180
5TCU|1|B|G|1181
5TCU|1|B|G|1182
5TCU|1|B|G|1183
5TCU|1|B|C|1184
Current chains
- Chain B
- 23S RRNA
Nearby chains
- Chain C
- 5S ribosomal RNA; 5S rRNA
- Chain LC
- 50S ribosomal protein L3
- Chain LI
- 50S ribosomal protein L36
- Chain LM
- 50S ribosomal protein L13
- Chain LP
- 50S ribosomal protein L16
Coloring options: