IL_5TCU_103

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGCG*CACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_103 not in the Motif Atlas

Homologous match to IL_5J7L_283

Geometric discrepancy: 0.3887

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5TCU|1|B|G|1080
5TCU|1|B|G|1081
5TCU|1|B|C|1082
5TCU|1|B|G|1083
*
5TCU|1|B|C|1160
5TCU|1|B|A|1161
5TCU|1|B|C|1162
5TCU|1|B|U|1163

Current chains

Chain B

23S RRNA

Nearby chains

Chain L8

50S ribosomal protein L25

Chain LL

50S ribosomal protein L6

Chain LP

50S ribosomal protein L16