IL_5TCU_113

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAUG*CUAG

Length

9 nucleotides

Bulged bases

5TCU|1|B|U|1464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_113 not in the Motif Atlas

Geometric match to IL_4WF9_054

Geometric discrepancy: 0.178

The information below is about IL_4WF9_054

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5TCU|1|B|C|1461
5TCU|1|B|G|1462
5TCU|1|B|A|1463
5TCU|1|B|U|1464
5TCU|1|B|G|1465
*
5TCU|1|B|C|1624
5TCU|1|B|U|1625
5TCU|1|B|A|1626
5TCU|1|B|G|1627

Current chains

Chain B

23S RRNA

Nearby chains