IL_5TCU_130

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAAAUUCCUUG*CCCG

Length

16 nucleotides

Bulged bases

5TCU|1|B|A|1965, 5TCU|1|B|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_130 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.1236

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

5TCU|1|B|C|1961
5TCU|1|B|G|1962
5TCU|1|B|A|1963
5TCU|1|B|A|1964
5TCU|1|B|A|1965
5TCU|1|B|U|1966
5TCU|1|B|U|1967
5TCU|1|B|C|1968
5TCU|1|B|C|1969
5TCU|1|B|U|1970
5TCU|1|B|U|1971
5TCU|1|B|G|1972
*
5TCU|1|B|C|1988
5TCU|1|B|C|1989
5TCU|1|B|C|1990
5TCU|1|B|G|1991

Current chains

Chain B

23S RRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain L2

50S ribosomal protein L2