IL_5TCU_152

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_152 not in the Motif Atlas

Homologous match to IL_7RQB_103

Geometric discrepancy: 0.2546

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5TCU|1|B|U|2679
5TCU|1|B|U|2680
5TCU|1|B|A|2681
5TCU|1|B|G|2682
5TCU|1|B|U|2683
5TCU|1|B|A|2684
5TCU|1|B|C|2685
*
5TCU|1|B|G|2690
5TCU|1|B|G|2691
5TCU|1|B|A|2692
5TCU|1|B|C|2693
5TCU|1|B|C|2694
5TCU|1|B|G|2695

Current chains

Chain B

23S RRNA

Nearby chains

Chain LL

50S ribosomal protein L6