IL_5TCU_153

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUCU*AUG

Length

8 nucleotides

Bulged bases

5TCU|1|B|U|2753

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_153 not in the Motif Atlas

Homologous match to IL_7RQB_104

Geometric discrepancy: 0.1445

The information below is about IL_7RQB_104

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

5TCU|1|B|C|2707
5TCU|1|B|C|2708
5TCU|1|B|U|2709
5TCU|1|B|C|2710
5TCU|1|B|U|2711
*
5TCU|1|B|A|2752
5TCU|1|B|U|2753
5TCU|1|B|G|2754

Current chains

Chain B

23S RRNA

Nearby chains

Chain L1

50S ribosomal protein L19

Chain LC

50S ribosomal protein L3

Chain LN

50S ribosomal protein L14