IL_5TCU_155

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUG*CAUAGC

Length

10 nucleotides

Bulged bases

5TCU|1|B|U|2739, 5TCU|1|B|A|2740

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_155 not in the Motif Atlas

Geometric match to IL_4V88_438

Geometric discrepancy: 0.3414

The information below is about IL_4V88_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5TCU|1|B|G|2721
5TCU|1|B|U|2722
5TCU|1|B|U|2723
5TCU|1|B|G|2724
*
5TCU|1|B|C|2737
5TCU|1|B|A|2738
5TCU|1|B|U|2739
5TCU|1|B|A|2740
5TCU|1|B|G|2741
5TCU|1|B|C|2742

Current chains

Chain B

23S RRNA

Nearby chains

Chain L1

50S ribosomal protein L19

Chain LQ

50S ribosomal protein L17