IL_5TCU_159

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGGAAG*UGGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_159 not in the Motif Atlas

Homologous match to IL_4WF9_108

Geometric discrepancy: 0.1411

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.1

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

8

Unit IDs

5TCU|1|B|U|2867
5TCU|1|B|G|2868
5TCU|1|B|G|2869
5TCU|1|B|A|2870
5TCU|1|B|A|2871
5TCU|1|B|G|2872
*
5TCU|1|B|U|2885
5TCU|1|B|G|2886
5TCU|1|B|G|2887
5TCU|1|B|A|2888
5TCU|1|B|G|2889

Current chains

Chain B

23S RRNA

Nearby chains

Chain L1

50S ribosomal protein L19

Chain LQ

50S ribosomal protein L17