IL_5TCU_160

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGG*CAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_160 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2257

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5TCU|1|C|C|2
5TCU|1|C|U|3
5TCU|1|C|G|4
5TCU|1|C|G|5
*
5TCU|1|C|C|110
5TCU|1|C|A|111
5TCU|1|C|G|112
5TCU|1|C|G|113

Current chains

Chain C

5S rRNA CHAIN

Nearby chains

Chain LR

50S ribosomal protein L18