IL_5TCU_166

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUC*GAGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_166 not in the Motif Atlas

Geometric match to IL_4WSM_372

Geometric discrepancy: 0.2824

The information below is about IL_4WSM_372

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16315.2

Basepair signature

cWW-cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

5TCU|1|A|C|347
5TCU|1|A|U|348
5TCU|1|A|C|349
*
5TCU|1|A|G|356
5TCU|1|A|A|357
5TCU|1|A|G|358
5TCU|1|A|G|359

Current chains

Chain A

16S RRNA

Nearby chains

Chain LN

50S ribosomal protein L14

Chain S3

30S ribosomal protein S12

Chain SA

30S ribosomal protein S20