IL_5TCU_170
3D structure
- PDB id
- 5TCU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Methicillin sensitive Staphylococcus aureus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAAU*GGAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5TCU_170 not in the Motif Atlas
- Homologous match to IL_4LFB_065
- Geometric discrepancy: 0.1489
- The information below is about IL_4LFB_065
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.2
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
5TCU|1|A|G|681
5TCU|1|A|G|682
5TCU|1|A|A|683
5TCU|1|A|A|684
5TCU|1|A|U|685
*
5TCU|1|A|G|721
5TCU|1|A|G|722
5TCU|1|A|A|723
5TCU|1|A|A|724
5TCU|1|A|C|725
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain L2
- 50S ribosomal protein L2
- Chain S2
- 30S ribosomal protein S11
- Chain S9
- 30S ribosomal protein S18
- Chain SE
- 30S ribosomal protein S6
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