IL_5TCU_187

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AAGGG*CGCUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_187 not in the Motif Atlas

Geometric match to IL_8P9A_349

Geometric discrepancy: 0.3683

The information below is about IL_8P9A_349

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

5TCU|1|B|A|1241
5TCU|1|B|A|1242
5TCU|1|B|G|1243
5TCU|1|B|G|1244
5TCU|1|B|G|1245
*
5TCU|1|B|C|1277
5TCU|1|B|G|1278
5TCU|1|B|C|1279
5TCU|1|B|U|1280
5TCU|1|B|U|1281

Current chains

Chain B

23S RRNA

Nearby chains

Chain LJ

50S ribosomal protein L4

Chain LO

50S ribosomal protein L15