IL_5TCU_199

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUCC*GGG

Length

7 nucleotides

Bulged bases

5TCU|1|B|U|2429

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_199 not in the Motif Atlas

Geometric match to IL_8C3A_468

Geometric discrepancy: 0.3154

The information below is about IL_8C3A_468

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

5TCU|1|B|U|2428
5TCU|1|B|U|2429
5TCU|1|B|C|2430
5TCU|1|B|C|2431
*
5TCU|1|B|G|2440
5TCU|1|B|G|2441
5TCU|1|B|G|2442

Current chains

Chain B

23S RRNA

Nearby chains

Chain LO

50S ribosomal protein L15

Chain LS

50S ribosomal protein L33 1