IL_5TCU_210

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GA*UGAUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_210 not in the Motif Atlas

Homologous match to IL_5J7L_016

Geometric discrepancy: 0.5142

The information below is about IL_5J7L_016

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

5TCU|1|A|G|300
5TCU|1|A|A|301
*
5TCU|1|A|U|312
5TCU|1|A|G|313
5TCU|1|A|A|314
5TCU|1|A|U|315
5TCU|1|A|C|316

Current chains

Chain A

16S RRNA

Nearby chains

Chain S7

30S ribosomal protein S16