IL_5TCU_213

3D structure

PDB id

5TCU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin sensitive Staphylococcus aureus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AAGAG*UGGU

Length

9 nucleotides

Bulged bases

5TCU|1|A|A|673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TCU_213 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.2219

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5TCU|1|A|A|670
5TCU|1|A|A|671
5TCU|1|A|G|672
5TCU|1|A|A|673
5TCU|1|A|G|674
*
5TCU|1|A|U|748
5TCU|1|A|G|749
5TCU|1|A|G|750
5TCU|1|A|U|751

Current chains

Chain A

16S RRNA

Nearby chains

Chain S6

30S ribosomal protein S15

Chain S9

30S ribosomal protein S18

Chain SE

30S ribosomal protein S6