IL_5TGA_306
3D structure
- PDB id
- 5TGA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CGGAAUU*GGAGAUG
- Length
- 14 nucleotides
- Bulged bases
- 5TGA|1|5|U|1716, 5TGA|1|5|A|1729
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5TGA_306 not in the Motif Atlas
- Homologous match to IL_5TBW_073
- Geometric discrepancy: 0.0911
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
5TGA|1|5|C|1711
5TGA|1|5|G|1712
5TGA|1|5|G|1713
5TGA|1|5|A|1714
5TGA|1|5|A|1715
5TGA|1|5|U|1716
5TGA|1|5|U|1717
*
5TGA|1|5|G|1727
5TGA|1|5|G|1728
5TGA|1|5|A|1729
5TGA|1|5|G|1730
5TGA|1|5|A|1731
5TGA|1|5|U|1732
5TGA|1|5|G|1733
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain c3
- 40S ribosomal protein S13
- Chain m9
- 60S ribosomal protein L19-A
- Chain n7
- 60S ribosomal protein L27-A
- Chain o0
- 60S ribosomal protein L30
- Chain o4
- 60S ribosomal protein L34-A
- Chain q3
- 60S ribosomal protein L43-A
Coloring options: