IL_5TGM_057
3D structure
- PDB id
- 5TGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CGU*AGUG
- Length
- 7 nucleotides
- Bulged bases
- 5TGM|1|1|G|1429
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5TGM_057 not in the Motif Atlas
- Homologous match to IL_5TBW_057
- Geometric discrepancy: 0.0992
- The information below is about IL_5TBW_057
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- Isolated cWS basepair
- Motif group
- IL_73554.3
- Basepair signature
- cWW-cWS-cWW
- Number of instances in this motif group
- 10
Unit IDs
5TGM|1|1|C|1376
5TGM|1|1|G|1377
5TGM|1|1|U|1378
*
5TGM|1|1|A|1428
5TGM|1|1|G|1429
5TGM|1|1|U|1430
5TGM|1|1|G|1431
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain L4
- 60S ribosomal protein L4-A
- Chain N8
- 60S ribosomal protein L28
- Chain O2
- 60S ribosomal protein L32
Coloring options: