IL_5TGM_184
3D structure
- PDB id
- 5TGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5TGM_184 not in the Motif Atlas
- Homologous match to IL_4V88_436
- Geometric discrepancy: 0.1721
- The information below is about IL_4V88_436
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
5TGM|1|2|C|973
5TGM|1|2|G|974
5TGM|1|2|A|975
5TGM|1|2|A|976
5TGM|1|2|G|977
*
5TGM|1|2|C|993
5TGM|1|2|G|994
5TGM|1|2|U|995
5TGM|1|2|A|996
5TGM|1|2|G|997
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain C4
- 40S ribosomal protein S14-A
- Chain D6
- 40S ribosomal protein S26-B
- Chain L2
- 60S ribosomal protein L2-A
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