IL_5TGM_389

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAUC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TGM_389 not in the Motif Atlas

Geometric match to IL_402D_001

Geometric discrepancy: 0.3522

The information below is about IL_402D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

5TGM|1|6|C|411
5TGM|1|6|A|412
5TGM|1|6|U|413
5TGM|1|6|C|414
*
5TGM|1|6|G|419
5TGM|1|6|A|420
5TGM|1|6|A|421
5TGM|1|6|G|422

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain n3

60S ribosomal protein L23-A

Chain s6

40S ribosomal protein S6-A