IL_5TGM_446
3D structure
- PDB id
- 5TGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5TGM_446 not in the Motif Atlas
- Geometric match to IL_4V88_466
- Geometric discrepancy: 0.0951
- The information below is about IL_4V88_466
- Detailed Annotation
- Non canonical cWW and near pair
- Broad Annotation
- Non canonical cWW and near pair
- Motif group
- IL_90170.1
- Basepair signature
- cWW-L-R-L-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5TGM|1|6|C|1644
5TGM|1|6|G|1645
5TGM|1|6|C|1646
5TGM|1|6|U|1647
*
5TGM|1|6|A|1753
5TGM|1|6|A|1754
5TGM|1|6|A|1755
5TGM|1|6|A|1756||A
5TGM|1|6|G|1757
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain d3
- 40S ribosomal protein S23-A
- Chain e0
- 40S ribosomal protein S30-A
- Chain q1
- 60S ribosomal protein L41-A
Coloring options: