IL_5TZS_004

3D structure

PDB id

5TZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Architecture of the yeast small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GUUA*UUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TZS_004 not in the Motif Atlas

Homologous match to IL_4V88_391

Geometric discrepancy: 0.0004

The information below is about IL_4V88_391

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5TZS|1|1|G|109
5TZS|1|1|U|110
5TZS|1|1|U|111
5TZS|1|1|A|112
*
5TZS|1|1|U|302
5TZS|1|1|U|303
5TZS|1|1|U|304
5TZS|1|1|C|305

Current chains

Chain 1

18S ribosomal RNA

Nearby chains

Chain 5

rpS4_ES4

Chain 8

rpS8_eS8

Chain D

rpS11_uS17