IL_5U4I_009
3D structure
- PDB id
- 5U4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CCAGUAG*CGAACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5U4I_009 not in the Motif Atlas
- Homologous match to IL_5J7L_251
- Geometric discrepancy: 0.1218
- The information below is about IL_5J7L_251
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_26307.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
5U4I|1|A|C|239
5U4I|1|A|C|240
5U4I|1|A|A|241
5U4I|1|A|G|242
5U4I|1|A|U|243
5U4I|1|A|A|244
5U4I|1|A|G|245
*
5U4I|1|A|C|253
5U4I|1|A|G|254
5U4I|1|A|A|255
5U4I|1|A|A|256
5U4I|1|A|C|257
5U4I|1|A|G|258
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 4
- 50S ribosomal protein L35
- Chain M
- 50S ribosomal protein L15
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