IL_5U4I_018

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5U4I|1|A|G|801, 5U4I|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U4I_018 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0871

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5U4I|1|A|G|674
5U4I|1|A|A|675
5U4I|1|A|A|676
5U4I|1|A|A|677
5U4I|1|A|C|678
*
5U4I|1|A|G|799
5U4I|1|A|A|800
5U4I|1|A|G|801
5U4I|1|A|A|802
5U4I|1|A|U|803
5U4I|1|A|A|804
5U4I|1|A|G|805
5U4I|1|A|C|806

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15