IL_5U4I_033

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

5U4I|1|A|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U4I_033 not in the Motif Atlas

Homologous match to IL_7RQB_035

Geometric discrepancy: 0.1718

The information below is about IL_7RQB_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.12

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

5U4I|1|A|C|994
5U4I|1|A|C|995
5U4I|1|A|A|996
*
5U4I|1|A|U|1159
5U4I|1|A|G|1160

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L30

Chain K

50S ribosomal protein L13

Chain R

50S ribosomal protein L20

Chain S

50S ribosomal protein L21