IL_5U4I_040

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAG*CGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U4I_040 not in the Motif Atlas

Homologous match to IL_5J7L_283

Geometric discrepancy: 0.2301

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5U4I|1|A|G|1038
5U4I|1|A|A|1039
5U4I|1|A|A|1040
5U4I|1|A|G|1041
*
5U4I|1|A|C|1114
5U4I|1|A|G|1115
5U4I|1|A|G|1116
5U4I|1|A|C|1117

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L36

Chain N

50S ribosomal protein L16

Chain W

50S ribosomal protein L25