3D structure

PDB id
5U4I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CCCAGACAG*UCGAG
Length
14 nucleotides
Bulged bases
5U4I|1|A|A|1046
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5U4I_041 not in the Motif Atlas
Homologous match to IL_5J7L_284
Geometric discrepancy: 0.2027
The information below is about IL_5J7L_284
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_99692.2
Basepair signature
cWW-tSS-tSH-L-R-R-L-cWW-L-L
Number of instances in this motif group
6

Unit IDs

5U4I|1|A|C|1043
5U4I|1|A|C|1044
5U4I|1|A|C|1045
5U4I|1|A|A|1046
5U4I|1|A|G|1047
5U4I|1|A|A|1048
5U4I|1|A|C|1049
5U4I|1|A|A|1050
5U4I|1|A|G|1051
*
5U4I|1|A|U|1108
5U4I|1|A|C|1109
5U4I|1|A|G|1110
5U4I|1|A|A|1111
5U4I|1|A|G|1112

Current chains

Chain A
23S rRNA

Nearby chains

Chain 5
50S ribosomal protein L36
Chain G
50S ribosomal protein L6

Coloring options:


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