IL_5U4I_046

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5U4I|1|A|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U4I_046 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1223

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5U4I|1|A|C|1208
5U4I|1|A|U|1209
5U4I|1|A|G|1210
5U4I|1|A|C|1211
5U4I|1|A|G|1212
5U4I|1|A|A|1213
5U4I|1|A|A|1214
5U4I|1|A|G|1215
*
5U4I|1|A|U|1234
5U4I|1|A|G|1235
5U4I|1|A|G|1236
5U4I|1|A|A|1237
5U4I|1|A|G|1238

Current chains

Chain A

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L20