IL_5U4I_086

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAUG*CUUUA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U4I_086 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3951

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

5U4I|1|A|U|2106
5U4I|1|A|G|2107
5U4I|1|A|A|2108
5U4I|1|A|U|2109
5U4I|1|A|G|2110
*
5U4I|1|A|C|2179
5U4I|1|A|U|2180
5U4I|1|A|U|2181
5U4I|1|A|U|2182
5U4I|1|A|A|2183

Current chains

Chain A

23S rRNA

Nearby chains

Chain y

Transfer RNA; tRNA