IL_5U4I_087

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUGUAGGAUAGG*CCC

Length

15 nucleotides

Bulged bases

5U4I|1|A|G|2116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U4I_087 not in the Motif Atlas

Homologous match to IL_3U4M_001

Geometric discrepancy: 0.5248

The information below is about IL_3U4M_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

5U4I|1|A|G|2110
5U4I|1|A|U|2111
5U4I|1|A|G|2112
5U4I|1|A|U|2113
5U4I|1|A|A|2114
5U4I|1|A|G|2115
5U4I|1|A|G|2116
5U4I|1|A|A|2117
5U4I|1|A|U|2118
5U4I|1|A|A|2119
5U4I|1|A|G|2120
5U4I|1|A|G|2121
*
5U4I|1|A|C|2177
5U4I|1|A|C|2178
5U4I|1|A|C|2179

Current chains

Chain A

23S rRNA

Nearby chains

Chain y

Transfer RNA; tRNA