IL_5U4I_108

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U4I_108 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.1692

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5U4I|1|A|G|2737
5U4I|1|A|A|2738
5U4I|1|A|U|2739
5U4I|1|A|A|2740
5U4I|1|A|A|2741
5U4I|1|A|G|2742
*
5U4I|1|A|C|2762
5U4I|1|A|G|2763
5U4I|1|A|A|2764
5U4I|1|A|A|2765
5U4I|1|A|A|2766
5U4I|1|A|C|2767

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain K

50S ribosomal protein L13