IL_5U4I_110

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGC*GUAC

Length

7 nucleotides

Bulged bases

5U4I|1|A|A|2879

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U4I_110 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.2683

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.4

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

21

Unit IDs

5U4I|1|A|G|2838
5U4I|1|A|G|2839
5U4I|1|A|C|2840
*
5U4I|1|A|G|2877
5U4I|1|A|U|2878
5U4I|1|A|A|2879
5U4I|1|A|C|2880

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L17

Chain Q

50S ribosomal protein L19