IL_5U4I_129

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5U4I|1|a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U4I_129 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.2685

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

5U4I|1|a|G|147
5U4I|1|a|G|148
5U4I|1|a|A|149
5U4I|1|a|U|150
5U4I|1|a|A|151
5U4I|1|a|A|152
5U4I|1|a|C|153
*
5U4I|1|a|G|168
5U4I|1|a|C|169
5U4I|1|a|U|170
5U4I|1|a|A|171
5U4I|1|a|A|172
5U4I|1|a|U|173
5U4I|1|a|A|174
5U4I|1|a|C|175

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20