3D structure

PDB id
5U4I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GAUUAG*CGACGAUC
Length
14 nucleotides
Bulged bases
5U4I|1|a|U|244, 5U4I|1|a|C|280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5U4I_130 not in the Motif Atlas
Homologous match to IL_5J7L_014
Geometric discrepancy: 0.1321
The information below is about IL_5J7L_014
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.3
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
5

Unit IDs

5U4I|1|a|G|242
5U4I|1|a|A|243
5U4I|1|a|U|244
5U4I|1|a|U|245
5U4I|1|a|A|246
5U4I|1|a|G|247
*
5U4I|1|a|C|277
5U4I|1|a|G|278
5U4I|1|a|A|279
5U4I|1|a|C|280
5U4I|1|a|G|281
5U4I|1|a|A|282
5U4I|1|a|U|283
5U4I|1|a|C|284

Current chains

Chain a
16S rRNA

Nearby chains

Chain l
30S ribosomal protein S12
Chain q
30S ribosomal protein S17

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2254 s