IL_5U4I_185

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAGG*CUGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U4I_185 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.2919

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_97631.1

Basepair signature

cWW-L-R-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5U4I|1|A|C|1526
5U4I|1|A|G|1527
5U4I|1|A|A|1528
5U4I|1|A|G|1529
5U4I|1|A|G|1530
*
5U4I|1|A|C|1541
5U4I|1|A|U|1542
5U4I|1|A|G|1543
5U4I|1|A|A|1544
5U4I|1|A|A|1545
5U4I|1|A|G|1546

Current chains

Chain A

23S rRNA

Nearby chains