IL_5U4I_186

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U4I_186 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0817

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

5U4I|1|A|G|1666
5U4I|1|A|G|1667
5U4I|1|A|A|1668
5U4I|1|A|A|1669
5U4I|1|A|C|1670
5U4I|1|A|U|1671
5U4I|1|A|A|1672
5U4I|1|A|G|1673
5U4I|1|A|G|1674
*
5U4I|1|A|C|1990
5U4I|1|A|U|1991
5U4I|1|A|G|1992
5U4I|1|A|U|1993
5U4I|1|A|C|1994

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain L

50S ribosomal protein L14