IL_5U4I_187

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U4I_187 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1582

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5U4I|1|A|U|1851
5U4I|1|A|U|1852
5U4I|1|A|A|1853
5U4I|1|A|A|1854
5U4I|1|A|U|1855
5U4I|1|A|U|1856
5U4I|1|A|G|1857
5U4I|1|A|A|1858
5U4I|1|A|U|1859
5U4I|1|A|G|1860
*
5U4I|1|A|U|1882
5U4I|1|A|U|1883
5U4I|1|A|G|1884
5U4I|1|A|A|1885
5U4I|1|A|U|1886
5U4I|1|A|C|1887
5U4I|1|A|G|1888
5U4I|1|A|A|1889
5U4I|1|A|A|1890
5U4I|1|A|G|1891

Current chains

Chain A

23S rRNA

Nearby chains

Chain y

Transfer RNA; tRNA