IL_5U4I_189

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUGA*UUG

Length

7 nucleotides

Bulged bases

5U4I|1|A|U|2203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U4I_189 not in the Motif Atlas

Geometric match to IL_7Y2B_001

Geometric discrepancy: 0.2485

The information below is about IL_7Y2B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

5U4I|1|A|U|2202
5U4I|1|A|U|2203
5U4I|1|A|G|2204
5U4I|1|A|A|2205
*
5U4I|1|A|U|2219
5U4I|1|A|U|2220
5U4I|1|A|G|2221

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain Y

50S ribosomal protein L28