IL_5U4I_209

3D structure

PDB id

5U4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GG*UGACC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5U4I_209 not in the Motif Atlas

Homologous match to IL_6CZR_125

Geometric discrepancy: 0.1875

The information below is about IL_6CZR_125

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_99460.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

5U4I|1|a|G|292
5U4I|1|a|G|293
*
5U4I|1|a|U|304
5U4I|1|a|G|305
5U4I|1|a|A|306
5U4I|1|a|C|307
5U4I|1|a|C|308

Current chains

Chain a

16S rRNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain p

30S ribosomal protein S16