IL_5U9F_099
3D structure
- PDB id
- 5U9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGUUC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- 5U9F|1|01|U|2689, 5U9F|1|01|U|2690
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5U9F_099 not in the Motif Atlas
- Homologous match to IL_5J7L_348
- Geometric discrepancy: 0.1297
- The information below is about IL_5J7L_348
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_23774.1
- Basepair signature
- cWW-L-R-L-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
5U9F|1|01|U|2687
5U9F|1|01|G|2688
5U9F|1|01|U|2689
5U9F|1|01|U|2690
5U9F|1|01|C|2691
*
5U9F|1|01|G|2718
5U9F|1|01|G|2719
5U9F|1|01|U|2720
5U9F|1|01|A|2721
5U9F|1|01|G|2722
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 05
- 50S ribosomal protein L3
- Chain 16
- 50S ribosomal protein L17
- Chain 18
- 50S ribosomal protein L19
Coloring options: