IL_5UQ7_168

3D structure

PDB id

5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ7_168 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1277

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5UQ7|1|a|C|1303
5UQ7|1|a|G|1304
5UQ7|1|a|G|1305
5UQ7|1|a|A|1306
5UQ7|1|a|U|1307
5UQ7|1|a|U|1308
*
5UQ7|1|a|A|1329
5UQ7|1|a|U|1330
5UQ7|1|a|G|1331
5UQ7|1|a|A|1332
5UQ7|1|a|A|1333
5UQ7|1|a|G|1334

Current chains

Chain a

16S rRNA

Nearby chains

Chain m

30S ribosomal protein S13

Chain u

30S ribosomal protein Thx