IL_5UQ7_177
3D structure
- PDB id
- 5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- ACCU*AAAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5UQ7_177 not in the Motif Atlas
- Geometric match to IL_5EW4_002
- Geometric discrepancy: 0.3416
- The information below is about IL_5EW4_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
5UQ7|1|a|A|1534
5UQ7|1|a|C|1535
5UQ7|1|a|C|1536
5UQ7|1|a|U|1537
*
5UQ7|1|x|A|6
5UQ7|1|x|A|7
5UQ7|1|x|A|8
5UQ7|1|x|U|9
Current chains
- Chain a
- 16S rRNA
- Chain x
- messenger RNA
Nearby chains
- Chain g
- 30S ribosomal protein S7
- Chain k
- 30S ribosomal protein S11
- Chain r
- 30S ribosomal protein S18
Coloring options: