IL_5UQ8_007

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_007 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.1061

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

5UQ8|1|A|U|239
5UQ8|1|A|G|240
5UQ8|1|A|A|241
5UQ8|1|A|G|242
5UQ8|1|A|U|243
5UQ8|1|A|A|244
5UQ8|1|A|G|245
*
5UQ8|1|A|C|253
5UQ8|1|A|G|254
5UQ8|1|A|A|255
5UQ8|1|A|A|256
5UQ8|1|A|A|257
5UQ8|1|A|G|258

Current chains

Chain A

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L35

Chain P

50S ribosomal protein L15