IL_5UQ8_017

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5UQ8|1|A|G|801, 5UQ8|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5UQ8_017 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.0962

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5UQ8|1|A|G|674
5UQ8|1|A|A|675
5UQ8|1|A|A|676
5UQ8|1|A|A|677
5UQ8|1|A|C|678
*
5UQ8|1|A|G|799
5UQ8|1|A|A|800
5UQ8|1|A|G|801
5UQ8|1|A|A|802
5UQ8|1|A|U|803
5UQ8|1|A|A|804
5UQ8|1|A|G|805
5UQ8|1|A|C|806

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L4

Chain P

50S ribosomal protein L15